STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1020Carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (428 aa)    
Predicted Functional Partners:
SPRI_1019
BCCT family transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.627
SPRI_4054
Pectate_lyase_3 domain containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.603
SPRI_2081
Serine protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.588
SPRI_5506
Trypsin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.576
SPRI_1288
Esterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.513
SPRI_6619
Transmembrane protease serine 13; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.513
SPRI_1694
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.478
SPRI_2755
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.447
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
 
 0.447
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.