Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1022Ricin B lectin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (925 aa)    
Predicted Functional Partners:
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
   0.590
SPRI_0083
Phosphotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.520
SPRI_7270
Phosphotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.520
SPRI_5659
Regulatory protein B; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.500
SPRI_0552
Mannan endo-1,4-beta-mannosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.478
SPRI_1023
Sugar-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.473
SPRI_0824
Beta-mannosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.426
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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