Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
SPRI_1116HTH_3 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (361 aa)    
Predicted Functional Partners:
SPRI_1117
XRE family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.736
SPRI_1118
Toxin-antitoxin system toxin component; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.715
SPRI_1203
FAD-dependent oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.536
SPRI_2071
LacI family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_6690
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_0592
Sugar-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.508
SPRI_1202
Oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.496
SPRI_1201
Dihydrodipicolinate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DapA family.
       0.448
SPRI_1119
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.446
SPRI_1200
Proline racemase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the proline racemase family.
       0.400
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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