Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
xylAXylose isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (389 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.997
SPRI_5047
Sugar kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the FGGY kinase family.
 
 
 0.982
SPRI_6864
PTS lactose transporter subunit IIC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.959
SPRI_0910
Xylulose kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the FGGY kinase family.
  
 
 0.952
SPRI_6506
Levanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.934
SPRI_6507
Fructokinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.921
SPRI_0791
Fructokinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.919
SPRI_0517
Sugar kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.909
SPRI_6590
alpha-L-arabinofuranosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.854
SPRI_1824
Beta-galactosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.840
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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