Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPRI_1185Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (130 aa)    
Predicted Functional Partners:
SPRI_1184
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.737
SPRI_1186
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.535
SPRI_6955
Transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.483
SPRI_6700
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.447
SPRI_1183
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.421
SPRI_1085
Polyketide synthase regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.417
SPRI_5874
8-amino-7-oxononanoate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.411
SPRI_0119
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.407
SPRI_7234
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.407
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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