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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1244Prenyltransferase UbiA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (356 aa)    
Predicted Functional Partners:
SPRI_1241
TatD family hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.974
SPRI_1242
Sugar phosphate isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.973
SPRI_1243
Xylose isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.973
SPRI_1239
Phosphodiesterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.972
SPRI_1245
Myo-inositol-1-phosphate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.972
SPRI_1240
Xylose isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.971
ubiX
Aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
    
 0.920
SPRI_3309
Decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the UbiD family.
    
 0.920
SPRI_3307
Prenyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the UbiA prenyltransferase family.
     
  0.900
SPRI_1238
Tat (twin-arginine translocation) pathway signal sequence; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.897
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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