Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1276Ricin B lectin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (152 aa)    
Predicted Functional Partners:
SPRI_1877
Endoglucanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.633
SPRI_0427
1,4-beta-xylanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.611
SPRI_0438
Cellulase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.604
SPRI_1191
Cellulose-binding family II protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.597
SPRI_1709
Coagulation factor 5/8 type domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.559
SPRI_0824
Beta-mannosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.529
SPRI_0883
Cellulose 1,4-beta-cellobiosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.512
SPRI_0552
Mannan endo-1,4-beta-mannosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.503
SPRI_1275
Oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.473
SPRI_1677
1,4-beta-xylanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.460
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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