Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
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[Homology]
Score
SPRI_1289Alcohol dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (346 aa)    
Predicted Functional Partners:
SPRI_6546
Alcohol dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.832
SPRI_1290
Integral membrane transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.792
SPRI_2466
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.683
leuC
Isopropylmalate isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
    
 
 0.643
SPRI_1291
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.560
SPRI_4814
Copper-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.530
SPRI_1675
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.525
SPRI_0413
Molecular chaperone GroES; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 
0.481
SPRI_5203
Molecular chaperone GroES; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 
0.479
SPRI_5836
Alcohol dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 
0.473
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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