Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_1318Polyketide cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (147 aa)    
Predicted Functional Partners:
SPRI_1319
Radical SAM protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.769
SPRI_1320
Acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.694
SPRI_1316
Signal transduction histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.643
SPRI_2703
Protein of unknown function (DUF3152); Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.578
SPRI_2489
Ser or Arg-related nuclear matrix protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.548
SPRI_6060
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.546
SPRI_1304
Acyl-peptide hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_1305
M20/M25/M40 family peptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_1306
Peptide ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_4853
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.489
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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