Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_1374PPOX class F420-dependent enzyme; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (122 aa)    
Predicted Functional Partners:
SPRI_1375
XRE family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.639
SPRI_1373
UL36 very large tegument protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.581
SPRI_5541
Proteasome protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.580
SPRI_4853
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.516
SPRI_0474
Nitroreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.510
SPRI_4850
Serine/threonine protein kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.456
SPRI_2886
Glycosyl transferase family 1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.422
SPRI_0334
Integral membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.421
SPRI_1369
F420-dependent oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.415
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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