Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_1417Sugar ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (332 aa)    
Predicted Functional Partners:
SPRI_1414
Sugar ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.995
SPRI_1415
Ribose ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.949
SPRI_1416
ABC transporter sugar-binding lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 
0.946
SPRI_2155
Two-component system sensor kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.946
SPRI_1419
Dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.828
SPRI_4819
Myo-inositol catabolism protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.801
SPRI_4817
Sugar kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.769
SPRI_4820
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.
 
  
 0.764
rbsD
Ribose ABC transporter; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.763
SPRI_4816
IolE protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.749
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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