STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alcAllantoicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the allantoicase family. (376 aa)    
Predicted Functional Partners:
SPRI_1431
Allantoicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.998
SPRI_2339
Urease subunit gamma; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
  0.917
ureA
Urease subunit gamma; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family.
 
  
  0.917
ureB
Urease subunit beta; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the urease beta subunit family.
    
  0.907
ureC
Urease subunit alpha; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
  0.906
ureC-2
Urease subunit alpha; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
  0.906
SPRI_1552
Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
  
 0.761
SPRI_1432
IclR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.718
SPRI_1553
Hydroxyisourate hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.711
SPRI_4479
Allantoate amidohydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.674
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.