Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPRI_1470Cytidine deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (143 aa)    
Predicted Functional Partners:
SPRI_1469
F420-dependent oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.831
moaA
Molybdenum cofactor biosynthesis protein MoeA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
   
    0.770
SPRI_0841
Transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
  
 0.665
hisE
phosphoribosyl-ATP pyrophosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
  
 0.640
SPRI_1468
AsnC family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.598
tdk
Thymidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.546
SPRI_2968
Uridine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.524
SPRI_2983
Pyrimidine-nucleoside phosphorylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
  0.500
SPRI_2947
biotin--[acetyl-CoA-carboxylase] synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.448
SPRI_0554
Glyoxalase/bleomycin resistance protein/dioxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.407
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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