Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
SPRI_1509Multi-component regulatory system-5; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
SPRI_1510
Dynein regulation protein LC7; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.965
SPRI_1511
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.948
SPRI_1508
ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.938
SPRI_0962
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.810
SPRI_2314
Histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.795
SPRI_4281
Sensor histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.793
SPRI_4280
Dynein regulation protein LC7; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.781
SPRI_6251
Histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.779
SPRI_2318
ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.775
SPRI_6156
Dynein regulation protein LC7; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.765
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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