STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1521Mini-circle protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (175 aa)    
Predicted Functional Partners:
SPRI_4504
Glyoxalase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.685
SPRI_0335
Glyoxalase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.636
SPRI_6967
Extradiol dioxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.608
SPRI_6288
Glyoxalase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.591
SPRI_5135
Glyoxalase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.589
SPRI_1520
Antibiotic biosynthesis monooxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.574
ectA
2,4-diaminobutyric acid acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A.
       0.555
SPRI_5651
Aspartate aminotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.555
SPRI_5652
Amidohydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.555
SPRI_5647
Multidrug DMT transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.546
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.