Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_1690GCN5 family acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (298 aa)    
Predicted Functional Partners:
SPRI_1689
Peptide-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.772
SPRI_6916
Multidrug transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.618
SPRI_4044
Aminoglycoside phosphotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
   0.554
SPRI_3462
Silent information regulator protein Sir2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.532
SPRI_1692
Alpha amylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_6966
Amidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.478
SPRI_1973
NIPSNAP family containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.470
SPRI_4868
Terpene synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.462
SPRI_4940
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.443
SPRI_6129
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.431
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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