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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1748ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (357 aa)    
Predicted Functional Partners:
SPRI_3028
Succinate dehydrogenase cytochrome b-556 subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.834
SPRI_1749
Peroxiredoxin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.832
SPRI_3029
Succinate dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.796
SPRI_6083
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.793
SPRI_1747
Diaminohydroxyphosphoribosylaminopyrimidine reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.785
SPRI_3031
Succinate dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
    0.782
SPRI_2162
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.774
SPRI_5950
ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.774
SPRI_3030
Fumarate reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.769
SPRI_1746
Indole-3-glycerol phosphate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.745
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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