Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
SPRI_1750Tat pathway signal sequence domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (452 aa)    
Predicted Functional Partners:
SPRI_5234
Alkaline phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.543
SPRI_1749
Peroxiredoxin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.537
SPRI_0520
Alkaline phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.535
SPRI_5436
Secreted alkaline phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.487
SPRI_1748
ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.477
SPRI_2610
Phosphodiesterase/alkaline phosphatase D; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.475
SPRI_0472
SWF or SNF family helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.410
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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