Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1815Alpha-mannosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (1279 aa)    
Predicted Functional Partners:
SPRI_1816
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.608
SPRI_1812
Sugar ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_1813
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_1814
ABC transporter solute-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_0570
Hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.491
SPRI_5630
Alanine-rich protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.464
SPRI_4599
beta-N-acetylhexosaminidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.436
SPRI_2439
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.433
SPRI_0736
Beta-hexosaminidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.428
SPRI_4756
beta-N-acetylhexosaminidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.415
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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