Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_1895Protein in whiE locus; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (374 aa)    
Predicted Functional Partners:
SPRI_1901
Polyketide synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.890
SPRI_1896
Protein in whiE locus; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.779
SPRI_1900
Polyketide cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.765
SPRI_1899
Curamycin polyketide synthase ACP; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.762
SPRI_1894
Polyketide hydroxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.746
SPRI_6314
Peptidase C60; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.630
SPRI_1897
beta-ACP synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.596
SPRI_1898
Polyketide beta-ketoacyl synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.596
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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