STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1905Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (182 aa)    
Predicted Functional Partners:
SPRI_3859
Phage protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.641
SPRI_6820
Leucine-rich repeat-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.573
SPRI_0831
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.530
SPRI_1739
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.528
SPRI_6915
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.512
SPRI_6251
Histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.464
SPRI_4304
DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.463
SPRI_1946
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.458
SPRI_1860
Biotin transporter BioY; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.434
SPRI_2885
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family.
  
     0.423
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.