Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
SPRI_1915ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (272 aa)    
Predicted Functional Partners:
SPRI_1914
ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.979
SPRI_2422
Sulfate ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.770
SPRI_5607
ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.670
SPRI_5201
Two-component system sensor kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.569
SPRI_1919
Bacteriocin biosynthesis protein SagD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.529
SPRI_1912
Salicylate 1-monooxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.526
SPRI_1913
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.526
SPRI_2421
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 
0.512
SPRI_5821
Multidrug ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
  0.497
SPRI_0918
Bacteriocin biosynthesis protein SagD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.491
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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