STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1922PbtD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (392 aa)    
Predicted Functional Partners:
SPRI_1921
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.908
SPRI_1919
Bacteriocin biosynthesis protein SagD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.892
SPRI_1917
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.890
SPRI_1918
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.884
SPRI_1920
Putative peptidase containing docking domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.884
SPRI_1923
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.552
SPRI_0918
Bacteriocin biosynthesis protein SagD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.544
SPRI_1602
Fatty acid-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.497
SPRI_0164
Cyclopropane-fatty-acyl-phospholipid synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.473
SPRI_4458
Cyclopropane-fatty-acyl-phospholipid synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.473
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.