STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1927Bilirubin oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (490 aa)    
Predicted Functional Partners:
SPRI_1930
3-dehydroquinate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.587
SPRI_1928
Long-chain-fatty-acid--CoA ligase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.581
SPRI_1929
2-amino-4,5-dihydroxy-6-one-heptanoic acid-7-phosphate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.581
tatC
Integral membrane protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.511
SPRI_1175
Proteinase inhibitor I4 serpin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
  0.471
SPRI_3864
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.434
SPRI_5423
Laccase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.
    
 
 0.408
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.