Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_1936Secreted cellulase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (896 aa)    
Predicted Functional Partners:
SPRI_6649
1,4-beta-xylanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.766
SPRI_0427
1,4-beta-xylanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.759
SPRI_0813
Pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.747
SPRI_0877
Pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.720
SPRI_6750
Glycoside hydrolase family 12; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
    0.693
SPRI_2877
Tyrosinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.645
SPRI_0812
Pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.643
SPRI_0883
Cellulose 1,4-beta-cellobiosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
0.640
SPRI_0426
alpha-L-arabinofuranosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.623
SPRI_0875
Secreted pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.606
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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