Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1952Acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (214 aa)    
Predicted Functional Partners:
SPRI_1953
DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.499
SPRI_1954
Toxin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.497
SPRI_5256
CHAT domain; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.496
SPRI_1863
Glycosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.471
SPRI_0877
Pectate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.425
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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