Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_1984Phytoene dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (493 aa)    
Predicted Functional Partners:
SPRI_1985
Phytoene synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.999
SPRI_1989
Lycopene cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.992
SPRI_0985
Squalene/phytoene synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.983
SPRI_1986
(2Fe-2S) ferredoxin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.913
SPRI_1987
Dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.832
SPRI_0541
Polyprenyl synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
  
  
 0.812
SPRI_0986
Squalene synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.730
SPRI_1988
Ubiquinone biosynthesis methyltransferase UbiE; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.641
SPRI_5671
Magnesium chelatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.640
idi
Isopentenyl-diphosphate delta isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.579
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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