Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_1987Dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (522 aa)    
Predicted Functional Partners:
SPRI_1989
Lycopene cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.995
SPRI_1988
Ubiquinone biosynthesis methyltransferase UbiE; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 0.987
SPRI_1986
(2Fe-2S) ferredoxin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 0.947
SPRI_1984
Phytoene dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.832
SPRI_1985
Phytoene synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.750
SPRI_6423
Siderophore-interacting protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.446
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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