STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_1997Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
SPRI_2573
PBS lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.601
SPRI_1196
Glycoside hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.571
SPRI_1998
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.558
SPRI_5137
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.537
SPRI_0423
CRISPR-associated protein Cse1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.485
SPRI_6689
Regulatory protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.479
SPRI_1996
Conserved putative secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.459
SPRI_2793
ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.456
SPRI_4281
Sensor histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.423
SPRI_4279
RarC (conservon) homologue; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.420
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.