Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
SPRI_2020Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
SPRI_2002
Membrane-bound polysaccharide biosynthesis protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.778
SPRI_2017
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.755
SPRI_2007
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.726
SPRI_2006
Heparinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.717
SPRI_2015
Putative integral membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.713
SPRI_6189
Polyketide cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.697
SPRI_0994
UDP-glucose 4-epimerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.583
SPRI_1443
Virulence factor; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.577
SPRI_2005
Oxidoreductase, NAD-binding domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.568
SPRI_0716
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.561
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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