Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_2029DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (682 aa)    
Predicted Functional Partners:
SPRI_2031
Potassium transporter TrkA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.911
SPRI_2030
Potassium transporter TrkA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.906
SPRI_2033
DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     0.805
SPRI_2028
RNA methyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.706
SPRI_0960
Multi-component regulatory system-3; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   0.510
SPRI_1862
Sulfonate ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.412
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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