Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPRI_2080Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (76 aa)    
Predicted Functional Partners:
SPRI_5068
DUF3145 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.708
SPRI_4616
Type III restriction enzyme, res subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.670
SPRI_5407
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.607
SPRI_1787
Uncharacterized protein Q1 colocalized with Q; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.583
SPRI_3511
rRNA or tRNA methyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily.
  
     0.556
SPRI_2037
DUF3710 domain containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.529
SPRI_2199
Zinc metalloprotease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.517
SPRI_4965
DUF3097 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.491
SPRI_2042
dUTPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.475
SPRI_4028
Folate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.
  
     0.465
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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