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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2109Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (389 aa)    
Predicted Functional Partners:
SPRI_4724
Peptidase M6; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.730
SPRI_2108
Putative secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    
0.724
SPRI_4219
Diguanylate cyclase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.701
SPRI_2932
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.697
SPRI_2497
Large Ala/Glu-rich protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.696
SPRI_3736
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.695
SPRI_1616
Iron-sulfur protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.684
SPRI_4940
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.663
SPRI_4944
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.660
SPRI_6378
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.655
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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