STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2129Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (395 aa)    
Predicted Functional Partners:
SPRI_6791
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.835
SPRI_4819
Myo-inositol catabolism protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.726
SPRI_5007
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.710
SPRI_5001
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.708
SPRI_0013
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.702
SPRI_4727
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.702
SPRI_7340
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.702
SPRI_1979
Cytoplasmic protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.681
SPRI_5227
CBS domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.681
SPRI_2128
mRNA interferase PemK; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.609
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.