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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_2129Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (395 aa)    
Predicted Functional Partners:
SPRI_6791
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.872
SPRI_4819
Myo-inositol catabolism protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.773
SPRI_0013
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.711
SPRI_4727
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.711
SPRI_7340
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.711
SPRI_5007
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.706
SPRI_5001
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.704
SPRI_1979
Cytoplasmic protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.691
SPRI_5227
CBS domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.691
SPRI_2128
mRNA interferase PemK; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.598
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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