Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_2133Cysteine dioxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (205 aa)    
Predicted Functional Partners:
SPRI_2134
Sulfurtransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.926
SPRI_2122
Two-component system response regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_2125
Glutamate ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.526
SPRI_2132
Monooxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.525
SPRI_2126
Glutamate ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.522
SPRI_5097
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.510
SPRI_5093
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.491
SPRI_3966
Asparagine synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.439
SPRI_6371
Regulatory protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.439
SPRI_2086
DUF4192 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.436
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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