STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2169BldB protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (81 aa)    
Predicted Functional Partners:
SPRI_2248
DNA-directed RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.834
SPRI_6079
XRE family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.811
SPRI_2168
Type VII secretion protein EccC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.807
SPRI_2172
Type VII secretion-associated serine protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
     
 0.736
SPRI_2173
Type VII secretion protein EccB; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.696
SPRI_2396
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.683
SPRI_2167
Type VII secretion integral membrane protein EccD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.642
SPRI_5369
Metallophosphoesterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.628
SPRI_2174
Type VII secretion protein EccE; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.616
SPRI_6903
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.585
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.