Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2169BldB protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (81 aa)    
Predicted Functional Partners:
SPRI_2168
Type VII secretion protein EccC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.780
SPRI_6079
XRE family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.729
SPRI_5369
Metallophosphoesterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.628
SPRI_2172
Type VII secretion-associated serine protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
     
 0.616
SPRI_2248
DNA-directed RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.615
SPRI_2173
Type VII secretion protein EccB; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.612
SPRI_2167
Type VII secretion integral membrane protein EccD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.605
SPRI_2174
Type VII secretion protein EccE; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.595
SPRI_6903
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.585
SPRI_2175
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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