Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_2173Type VII secretion protein EccB; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (513 aa)    
Predicted Functional Partners:
SPRI_2174
Type VII secretion protein EccE; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 
 0.948
SPRI_2175
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.931
SPRI_2172
Type VII secretion-associated serine protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
 
 
 0.922
SPRI_2168
Type VII secretion protein EccC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.897
SPRI_2167
Type VII secretion integral membrane protein EccD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.863
SPRI_2170
WXG100 family type VII secretion target; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.
  
 
 0.858
SPRI_2176
Topoisomerase II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.745
SPRI_4183
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.713
SPRI_2826
Ricin B lectin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   0.676
SPRI_4868
Terpene synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.655
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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