Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_2273Allantoin permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the purine-cytosine permease (2.A.39) family. (481 aa)    
Predicted Functional Partners:
SPRI_2274
Luciferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.642
pyrB
Aspartate carbamoyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.635
carA
Carbamoyl phosphate synthase small subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the CarA family.
   
    0.624
carB
Carbamoyl phosphate synthase large subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the CarB family.
   
    0.619
ftsY
Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
     
 0.573
SPRI_6083
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.504
SPRI_2294
Phosphomethylpyrimidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.431
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
   
  
 0.413
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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