Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplI | rplR | SPRI_3813 | SPRI_3175 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.997 |
| rplI | rpmB | SPRI_3813 | SPRI_2293 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L28; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family. | 0.991 |
| rplI | rpmE | SPRI_3813 | SPRI_2531 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.950 |
| rplI | rpmF-2 | SPRI_3813 | SPRI_2284 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L32; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family. | 0.972 |
| rplI | rpmG | SPRI_3813 | SPRI_3218 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L33 2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL33 family. | 0.984 |
| rplI | rpmJ | SPRI_3813 | SPRI_3167 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L36; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL36 family. | 0.980 |
| rplI | rpsF | SPRI_3813 | SPRI_3810 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplI | rpsO | SPRI_3813 | SPRI_2166 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.989 |
| rplI | rpsQ | SPRI_3813 | SPRI_3182 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.995 |
| rplI | rpsZ | SPRI_3813 | SPRI_3178 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.985 |
| rplR | rplI | SPRI_3175 | SPRI_3813 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.997 |
| rplR | rpmB | SPRI_3175 | SPRI_2293 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L28; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family. | 0.993 |
| rplR | rpmE | SPRI_3175 | SPRI_2531 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.983 |
| rplR | rpmF-2 | SPRI_3175 | SPRI_2284 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L32; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family. | 0.975 |
| rplR | rpmG | SPRI_3175 | SPRI_3218 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L33 2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL33 family. | 0.995 |
| rplR | rpmJ | SPRI_3175 | SPRI_3167 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L36; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL36 family. | 0.998 |
| rplR | rpsF | SPRI_3175 | SPRI_3810 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.996 |
| rplR | rpsO | SPRI_3175 | SPRI_2166 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.993 |
| rplR | rpsQ | SPRI_3175 | SPRI_3182 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
| rplR | rpsZ | SPRI_3175 | SPRI_3178 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.995 |
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