Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2388Cysteine desulfurase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (387 aa)    
Predicted Functional Partners:
SPRI_5614
Nitrogen fixation protein NifU; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.986
SPRI_2698
Molybdopterin biosynthesis protein MoeZ; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.982
SPRI_4018
Thiosulfate sulfurtransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.928
SPRI_5342
Aminotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.
  
  
 
0.923
SPRI_2051
Thiosulfate sulfurtransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.920
SPRI_3733
Phenylacetic acid degradation NADH oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.865
SPRI_6551
Ferredoxin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.865
SPRI_5338
Iron-sulfur cluster assembly accessory protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.
 
 
 0.856
SPRI_2579
Aminobenzoate oxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.847
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
  
 0.795
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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