Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_2432Sugar-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (2165 aa)    
Predicted Functional Partners:
SPRI_2436
Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.829
SPRI_2431
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.773
SPRI_6916
Multidrug transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.568
SPRI_2782
Chitinase II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.564
SPRI_6915
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.551
SPRI_2821
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.520
SPRI_2606
LigA protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.514
SPRI_1720
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.504
SPRI_2072
Secreted glycosyl hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.485
SPRI_2433
Secreted esterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.471
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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