STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2447PKD domain containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (510 aa)    
Predicted Functional Partners:
SPRI_2448
Histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.690
SPRI_4160
Efflux ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.625
SPRI_2450
Transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.609
SPRI_2449
Histidine kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.601
SPRI_2451
Protein of unknown function DUF1121; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.590
SPRI_5215
Integral membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.517
SPRI_3462
Silent information regulator protein Sir2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.503
SPRI_1674
Serine protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
  
 
 0.501
SPRI_2785
Serine protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
  
 
 0.501
SPRI_3893
Protease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.501
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.