Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_2584Alanine-phosphoribitol ligase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (411 aa)    
Predicted Functional Partners:
SPRI_2586
Multi-component regulatory system-8; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.848
SPRI_2585
ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.819
SPRI_2587
Roadblock/LC7 family protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.819
SPRI_2588
Two component sensor kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.819
SPRI_2589
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.657
SPRI_6406
Electron transfer flavoprotein subunit beta; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.601
SPRI_6151
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.500
SPRI_6152
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.498
SPRI_5445
Transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.485
SPRI_6407
Electron transfer flavoprotein subunit alpha; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.438
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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