Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_2690Peptidase M20; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (465 aa)    
Predicted Functional Partners:
SPRI_2691
ATP-dependent DNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
       0.872
SPRI_2689
NUDIX hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.817
SPRI_2738
Succinyl-diaminopimelate desuccinylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
      
 0.757
SPRI_2693
Helicase UvrD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
       0.664
SPRI_2694
methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.621
SPRI_2695
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.604
SPRI_6565
Glutamine amidotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
    0.545
SPRI_2692
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.541
argG
Argininosuccinate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.434
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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