Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_2792Type III restriction enzyme; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (963 aa)    
Predicted Functional Partners:
SPRI_2791
Restriction modification system DNA specificity subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.989
SPRI_2790
DNA methyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.986
SPRI_1181
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.784
SPRI_4437
Restriction endonuclease subunit M; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.763
SPRI_5221
Restriction endonuclease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.725
SPRI_2793
ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.554
SPRI_2794
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.519
SPRI_4066
Restriction endonuclease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.440
SPRI_6789
Restriction endonuclease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.440
SPRI_7005
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.440
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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