Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2793ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (458 aa)    
Predicted Functional Partners:
SPRI_2794
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.986
SPRI_5540
Sheath polysaccharide-degrading enzyme; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.610
SPRI_2791
Restriction modification system DNA specificity subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.567
SPRI_2792
Type III restriction enzyme; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.554
SPRI_2790
DNA methyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.548
SPRI_4662
CHRD domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.543
SPRI_5137
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.478
SPRI_1708
1,4-beta-xylanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.475
SPRI_1997
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.456
SPRI_0540
DUF2236 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.452
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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