STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2826Ricin B lectin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (507 aa)    
Predicted Functional Partners:
fumC
Aspartate ammonia-lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.783
SPRI_2175
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.739
SPRI_2828
DUF402 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.724
SPRI_2174
Type VII secretion protein EccE; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.720
SPRI_2167
Type VII secretion integral membrane protein EccD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.703
SPRI_2173
Type VII secretion protein EccB; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
   0.674
SPRI_3707
Aminoglycoside phosphotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.638
SPRI_4183
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.618
SPRI_5576
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.577
SPRI_3195
LmbE family protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.570
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.