Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_2873N-acyl-D-amino acid deacylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (536 aa)    
Predicted Functional Partners:
SPRI_2872
Amino acid deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.946
SPRI_2871
Carbohydrate kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.736
SPRI_2869
Endoribonuclease L-PSP; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.721
SPRI_2870
IclR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.700
SPRI_2901
Aminotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_2902
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.517
SPRI_2868
Sugar transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.419
SPRI_6134
Amidohydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.405
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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