Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_2996Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (443 aa)    
Predicted Functional Partners:
SPRI_2995
Glycosyl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.950
SPRI_2994
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.897
SPRI_2993
Transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.885
SPRI_2990
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.869
SPRI_2992
N-acetylneuraminate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.831
SPRI_4446
Glycosyl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.790
SPRI_2963
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.643
SPRI_3809
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.618
SPRI_0993
Transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.509
SPRI_6886
GAF domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.477
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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