Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_3011DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (284 aa)    
Predicted Functional Partners:
SPRI_3012
Toxin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.891
SPRI_3444
Regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.771
SPRI_1101
AbaA-like protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.768
SPRI_6872
Transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.766
SPRI_1138
Methyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.754
SPRI_1509
Multi-component regulatory system-5; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.733
SPRI_3985
Translation initiation factor IF-2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.731
SPRI_5362
RNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.731
SPRI_6874
Protein of unknown function DUF574; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.728
SPRI_0758
Protein of unknown function DUF574; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.727
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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